Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.
Run this command in Claude Code to install the skill
/install https://github.com/K-Dense-AI/claude-scientific-skills/tree/main/scientific-skills/omero-integrationInstall to your personal skills directory (~/.claude/skills/omero-integration/)
# Create skill directory
mkdir -p ~/.claude/skills/omero-integration
# Download SKILL.md from GitHub
curl -sL "https://raw.githubusercontent.com/K-Dense-AI/claude-scientific-skills/main/scientific-skills/omero-integration/SKILL.md" \
-o ~/.claude/skills/omero-integration/SKILL.mdTarget: ~/.claude/skills/omero-integration/
Visit the GitHub repository to view the full documentation for omero-integration.
Read full documentationScientific & Research
Skills for scientific computing, bioinformatics, and research
Direct REST API access to KEGG (academic use only). Pathway analysis, gene-pathway mapping, metabolic pathways, drug interactions, ID conversion. For Python workflows with multiple databases, prefer bioservices. Use this for direct HTTP/REST work or KEGG-specific control.
This skill should be used at the start of any computationally intensive scientific task to detect and report available system resources (CPU cores, GPUs, memory, disk space). It creates a JSON file with resource information and strategic recommendations that inform computational approach decisions such as whether to use parallel processing (joblib, multiprocessing), out-of-core computing (Dask, Zarr), GPU acceleration (PyTorch, JAX), or memory-efficient strategies. Use this skill before running analyses, training models, processing large datasets, or any task where resource constraints matter.
Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics and generate-image, deep integration with research-lookup for data gathering, and multi-framework strategic analysis including Porter Five Forces, PESTLE, SWOT, TAM/SAM/SOM, and BCG Matrix.
Convert files and office documents to Markdown. Supports PDF, DOCX, PPTX, XLSX, images (with OCR), audio (with transcription), HTML, CSV, JSON, XML, ZIP, YouTube URLs, EPubs and more.